rs48783483 SNP Detail

Summary

• ID
  rs48783483
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:161576649 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCTAA AGAGAAAAAA AGCCACTTGA
  Y
  CTCAAAAAGG ACACTTCAGC TCCCA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60335749	NES15843488	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	C	T	T	C	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48783483					SNP	T	T	T	C	T	T	C	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60335749	NES15843488	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:161576649 () rs orientation: forward

Symbol	Name	Function Class
Gm5049	predicted gene 5049	1435 bp downstream
Gm70711	predicted gene, 70711	within coordinates
Gm70716	predicted gene, 70716	1115 bp downstream
Rr396465	regulatory region 396465	555 bp downstream
Rr421832	regulatory region 421832	588 bp distal
Rr421833	regulatory region 421833	16 bp distal
Rr421834	regulatory region 421834	1605 bp proximal
Rr421835	regulatory region 421835	1718 bp proximal
Tssr9696	transcription start site region 9696	1529 bp downstream