rs48783607 SNP Detail

Summary

• ID
  rs48783607
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:55065955 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGACTCAAAT TCCTTCCCGT
  CTTCTCTGGT TACTTTCCTT ATGGAATCTG GTTGCTTCTC AACATGTTTC TAGCTCTGTT
  TACTCTTGTG CAGCATAAAA TAAGCGACTA CCCAGAAAAC TTTGGCAACT GGTCAAATCT
  GCCTTTCCTT CTCTCTTCCT CCTGATTCTC CAACACCTAG CTCTCAAAGG GAAAAAGATA
  R
  AACACCAGGA CACAAGTGAT TAAAGGAGTA AACTACCAGA TTTTCTGCCG GAATCATTTA
  GTGCAAGCAC CACAACACGA TCCAGCCGCC TTGGAGATGC CTGTATCGCG AAGGCTGGGA
  TTGGCAGGCC TGCGCTGAAG CGGCCTCCGT TAGGAGCGGC CCGAAAGCGG CTGCCGTCAT
  TCAGGGCTTT CCAGGTACGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60734999	NES16375809	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48783607					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60734999	NES16375809	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:55065955 () rs orientation: forward

Symbol	Name	Function Class
Cpgi259	CpG island 259	24 bp proximal
Gm71172	predicted gene, 71172	258 bp upstream
Rr371303	regulatory region 371303	within coordinates
Sf3b1	splicing factor 3b, subunit 1	within coordinates
Tssr6707	transcription start site region 6707	420 bp downstream
Tssr6708	transcription start site region 6708	801 bp upstream
Tssr11708	transcription start site region 11708	581 bp downstream
Tssr11709	transcription start site region 11709	677 bp downstream