rs48784367 SNP Detail

Summary

• ID
  rs48784367
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:34973796 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATGAAATAA ATAAATCTTA
  AAAAGAAAAA GGGCATTGTG CAATGCATGC CTTGCTAAGT TGGAATGTGT GGTACAAGAA
  CTATAACAAT AAAGCTGAGA AGCAAAGATA GGGAGGGAAG TCAGATATAA ACGGCCCATC
  CCTTACCCTG TTCCTCCCAC AGCTAATGGA GTAGGGTCAT GTCAGGATTC CGGATGCTGG
  R
  CTGAGGGACC AGGAAAGGAT GGAGGGAAGG AGACTGGGTT TTGCTCTCTG CTCAGAAAGT
  TGGAGGTGGA TAAAGTAGTC CACAGTTGCA GAGGACTCCC CAAGATGTAA AAGGGTGCAT
  GGGACTGGGA ATGTAGAGAT TAAGGTGGCA GGCGACTCAG CCAGCCTCGG GCATCCATCA
  CTAATGCCCC CCAGGGGCTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60993513	NES16129173	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	G	G	G	G	G	G	A	G	G	G	G	G
ss148806132	ENSMUSSNP1679089	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G						G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48784367					SNP	A	A	G	G	G	G	G	G	G	G	A	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60993513	NES16129173	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:34973796 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18867	CpG island 18867	566 bp proximal
Cpgi18868	CpG island 18868	1145 bp proximal
Gm73037	predicted gene, 73037	within coordinates
Rr645353	regulatory region 645353	1129 bp distal
Tssr72028	transcription start site region 72028	1159 bp downstream
Tssr72029	transcription start site region 72029	1175 bp downstream
Wdr88	WD repeat domain 88	within coordinates