rs48784404 SNP Detail

Summary

• ID
  rs48784404
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127290902 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTTATATTG TATTTAAATT
  AGTATACTTA ACATTTTACT TCCTAAATAT TTGCATCTAA GTGTTACACG CACATAATAA
  CAAAATTAGC CAATACAGTT ATAAAAATGA TTTTTGCTTA GCATGCGATT TCTCTTACAT
  GACAAACAGT AGCATCATAT TCATTCTTAC ATGCATAACT ACTTCTAACC CAGATTTAAT
  M
  CCTGTTCTCA CAATTCCAAA GGGAAAAAAA TAACTTGAAG TGCAATTTAA AATACTATCA
  TAAAACTAGA ATCCTGGCCC CATAAGGATT TCAAACTCTA GCAATTCCTT TGGAAACAGA
  CTGACATAAA AAGAAATTCT CGTTAAATTT TAGGTATTAC ATTTAAAACC TCCATTAAAA
  GAGTATACCG TAATGCAACT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss61079254	NES16587035	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	C	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs48784404					SNP	A	A	A	A	A	A	C	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61079254	NES16587035	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127290902 () rs orientation: forward

Symbol	Name	Function Class
Ank2	ankyrin 2, brain	within coordinates
Cpgi13791	CpG island 13791	1079 bp proximal
Rr584800	regulatory region 584800	1738 bp proximal
Tssr35576	transcription start site region 35576	1733 bp downstream
Tssr35577	transcription start site region 35577	1796 bp downstream
Tssr35578	transcription start site region 35578	1823 bp downstream
Tssr35579	transcription start site region 35579	1842 bp downstream