rs48784625 SNP Detail

Summary

• ID
  rs48784625
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:100141480 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAAAACAAGT TAGCCAGTAG TGGAACCACA GAAGCCAAAA
  GGTAAGATCA GTACATTTAG AGATTTTTCC AGAACGATGG ACATTGATGG TTCTGTCTGT
  R
  TGCTGAGTTT TACAGTTGAA TGGTACTTCC ATCATGGAGT CAGATGTGCT AAGGTCTGGG
  GTCCTATTAA GGTCTGGGGC CTCTCACACT TTCTTGTTC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss145533099	ENSMUSSNP1048736	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48784625					SNP	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:100141480 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19484	CpG island 19484	445 bp proximal
Gm72028	predicted gene, 72028	within coordinates
Rr400469	regulatory region 400469	876 bp upstream
Rr652131	regulatory region 652131	19 bp proximal
Rr652132	regulatory region 652132	146 bp proximal
Rr652133	regulatory region 652133	747 bp proximal
Tssr68123	transcription start site region 68123	1046 bp upstream
Tssr68124	transcription start site region 68124	1076 bp upstream
Tssr68125	transcription start site region 68125	1497 bp upstream
Tssr68126	transcription start site region 68126	1556 bp upstream
Tssr68127	transcription start site region 68127	1666 bp upstream
Tssr68128	transcription start site region 68128	1771 bp upstream
Tssr68129	transcription start site region 68129	1996 bp upstream
Ucp2	uncoupling protein 2 (mitochondrial, proton carrier)	1085 bp upstream