rs48784697 SNP Detail

Summary

• ID
  rs48784697
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr19:11076146 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T CCTAACTTTG GAACTGTTAT TCTGACAGAT GCAGTCTTTC
  CTGGTTGGTT GAGCAATTTG AGTTAGTGAT GGGCACCTAT AATTTGCTAT AGAAAATGTT
  Y
  TAACAAATGT AATTATAGTA GGAACAAAGC TGGAGATGCA TTACTGTTAA AATCCTTCAA
  GGGCCCACTG GTACCTATAG TCTAAAGTAA GCATTCTTTA A                    
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss146048160	ENSMUSSNP7200645	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48784697					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:11076146 () rs orientation: forward

Symbol	Name	Function Class
Ms4a20	membrane-spanning 4-domains, subfamily A, member 20	Intron
Ms4ac	membrane-spanning 4-domains, subfamily A cluster	within coordinates
Tssr158291	transcription start site region 158291	1876 bp upstream