rs48784860 SNP Detail

Summary

• ID
  rs48784860
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:69311152 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGTCTTCGT CTTACCTCTG
  CTTCTTTGTT ATTTTGATGG TTCTTTGCAG TCTCTCTCAG CATTTCCTAG GCATGAGTTA
  GGCAAAAAAA AAAAAAAAAA AAAAAAAAAT CTTTTTCTTA GAATAGGCTT TCCTTTCTTT
  AGATTTTTTT TTTTTTTTTT TTTTTTTTAC ACAGCGTGAT TTATTAGTGT GATTTACAGT
  Y
  TAGTTTAAGA GGAAAGCACA AAGCATTGAT TCATGTTTCT GGATTTTTTT TTTGTTATAG
  CAAGGAACTG ATTTTGGGGT TCAGTTACTT AGAACTTTCC TTGTTGGGGA AAAGCATTCT
  TCATTATTTT CCCTAATATA GTAATTGCTG TGTTCTCTAG CATGTTGGAA GAAAATATAC
  CTTTAATTGT GCTGATTTCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss61416493	NES16802494	PERLEGEN	MM_PANEL2	f	SNP	C	T	C	T	C	T	T	T	T	C		T	T	C	C		C
ss322998236	CHEV_9_69251677	CHEVERUD	SCREENING_POP	f	SNP											C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs48784860					SNP	C	T	C	T	C	T	T	T	T	C	C	T	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61416493	NES16802494	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:69311152 () rs orientation: forward

Symbol	Name	Function Class
Ice2	interactor of little elongation complex ELL subunit 2	within coordinates
Tssr85856	transcription start site region 85856	30 bp downstream