rs48785952 SNP Detail

Summary

• ID
  rs48785952
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:83403317 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATCACATCG ACACAAGCAT
  ATTTTCTCTA TACACTCGCC ATTCAGCAGA GGGTAGCTTC ATGGTTTATA GAATTTTCAA
  TTGGTAAAAG TAATTGTTCA GTGTTTCAGG CTGTGGTCTA CTGGAGCAAA GGTACAAAAA
  GGAGTTATAT GGCTTCATAA AACACATAGT TTATAACAGA AATGTGTGAA GTATCTACTG
  Y
  TGCTCTAACA ATCTACCACA AACTTAGTGG TCAAAATGGC TCAAATTTAC TTCTTTACAG
  TTTTGAAGGT CAGAATCTGG TATGAGCATC CTGAACTTAA TATTGGTGAC TAGGGTTTGA
  TCTTTCTAGA GGCTTCAAGA GAGCATGTAT TTCTACTGTA TACATCCGTG TCTGCCTGCA
  TCCCTTGGCC AAGACCAAGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss144833305	ENSMUSSNP5977565	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs48785952					SNP	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:83403317 () rs orientation: forward

Symbol	Name	Function Class
Gm37989	predicted gene, 37989	1000 bp downstream
Gm69621	predicted gene, 69621	664 bp downstream