rs48786043 SNP Detail

Summary

• ID
  rs48786043
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:61563124 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAATACCACC AGCAAAGATC
  TTTTTCACAG TTAAGTGGGC ACCTGGTCGC TGCGAATCTT CTCTTGAGAC AGCTCTCTTG
  GGTTCCACAA CTCTTCCATC CACCTTGTGT GGTCTTGCAT TCATGGCAGC ATCCACTTCT
  TCCACAGTGG CGTATGTGAC AAACCCAAAA CCCCTGGATC TCTTGGTGTT TGGATCTCTC
  R
  TTACCACACA GTCGGTTAGT GTTCCCCATT GCTCAAAATG GCTCCTCAGA CTCTGGTCGG
  TTGTTTCGAA GCTCAGCCCT CCAATGAAGA GCTTCCGAGC TGTTCTGGCT CCTTGGGAGC
  CTCTGATTTA GACATGATGG CAGGGTTACG AGAGCCTTCA GCCATGCTTC CTCGGCAGCG
  TCAAAGAGCA GAAAGGAATA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss62418771	NES17249518	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48786043					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62418771	NES17249518	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:61563124 () rs orientation: forward

Symbol	Name	Function Class
Gm5461	predicted gene 5461	within coordinates
Gm62465	predicted gene, 62465	1555 bp upstream
Rr289706	regulatory region 289706	1277 bp proximal
Rr297339	regulatory region 297339	1876 bp proximal
Tssr129059	transcription start site region 129059	218 bp downstream