rs48789307 SNP Detail

Summary

• ID
  rs48789307
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:11136674 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGAGTGAT CACCCTAAAG
  CTTCCAGAAG CTTAATGGTA TTATTATTTC CTCTTTAGCT AGCCATTGTA TTTTTTTTTA
  AATAATCTTT CTAGCTTAAG AGAGGGGCTT TTCAAAAACG ATCTGAACAT CCAGGCTTCC
  CATCTTCCAT GAAGTATAAG AGTAATGACT GAGGGAAACA GTGGAAGGCC TGGAGCAACG
  K
  CAGCACAGCC CACTCTGGCA GGGTGGAAAC CGCCCGCTCT ACTCTTCCCG CAGGACTCAT
  GCTTGCTCTT GAACAACTGG CCTGTGCCTG CAGTAACCCC CCCCCTGCCC CCCAGCACTC
  TATCAAAGCT GGAAGGATGT TTTTCACTGT GTTTTGTAGG CATCCAGCCT ACCCTTGCTC
  TCTCTATGGA CTTAAAAGCT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ
ss62628163	NES17310269	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ
rs48789307					SNP	T	T	T	T	T	T	G	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62628163	NES17310269	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:11136674 () rs orientation: forward

Symbol	Name	Function Class
Adamts12	ADAM metallopeptidase with thrombospondin type 1 motif 12	within coordinates
Rr390347	regulatory region 390347	1926 bp upstream