rs48790260 SNP Detail

Summary

• ID
  rs48790260
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:115569512 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTGATAGGT GCGTCCTCTA
  TCCTGGTGGA GCCCACGTCC CCCTGGCAGA GAGGGCAGCA TTGGGGTACA CTGAAGGTGT
  AGATGGACCT CTCGCAGTGC CTGAATTTAA TTAGAGGCTT CCCAGCTCCT TCGAAGTGCA
  TCCCGAATGA TTGCCAAGCC ACCAAGACAG GTTTCAGGAG ACTTCCTTTT CCTCATTATA
  Y
  AGCTGGCTAA CTCACACCAC CTGAGTAACC TAATCTACAG TGACATCATC CTGGGTGGAG
  GCTTTAGACA CCAAGCTAGG TAGATTAACC AGTAACCAGG CTGCCCCTGC TGGACTCTTA
  AAGAGCTAGT TCTTATTTGA GCTGGCTTAC CAAATTTCTT TTTAGATGCT GCCGTTTGCA
  GCTGGTGACA GCCACTCCTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60931169	NES16195615	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	T	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48790260					SNP	C	C	C	C	C	C	C	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60931169	NES16195615	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:115569512 () rs orientation: forward

Symbol	Name	Function Class
Mkrn2os	makorin, ring finger protein 2, opposite strand	within coordinates
Tssr62513	transcription start site region 62513	48 bp upstream
Tssr62514	transcription start site region 62514	22 bp upstream
Tssr62515	transcription start site region 62515	14 bp upstream
Tssr62516	transcription start site region 62516	within coordinates
Tssr62517	transcription start site region 62517	20 bp downstream