rs48791569 SNP Detail

Summary

• ID
  rs48791569
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:118087862 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTTCA ATACGATGTA AGGCTGCTTA
  R
  GCAATCAAGA ACCTCCCAGC CACTA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss145780857	ENSMUSSNP5272272	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48791569					SNP	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:118087862 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19620	CpG island 19620	1096 bp proximal
Itpripl2	inositol 1,4,5-triphosphate receptor interacting protein-like 2	within coordinates
Rr381380	regulatory region 381380	1081 bp downstream
Rr654485	regulatory region 654485	6 bp distal
Rr654486	regulatory region 654486	96 bp distal
Tssr74439	transcription start site region 74439	1073 bp upstream
Tssr74440	transcription start site region 74440	351 bp upstream