rs48791659 SNP Detail

Summary

• ID
  rs48791659
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:35666899 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATACCATAA TGCTTTCTAA
  ACTTATGGTC CAACCATAAC CTCCATGATT GTGTTCATCT CCCCTCCCTT CTAATAAGCT
  GTCCTCATTG TCTAGAGGAT AGTTTCATTC AACTCCTTTC TGGAACCAAA TGACCATTTT
  CCTTCATCCT CCCTTTAACA ATCTGGAGAT TCACCCAGTC TCTGGGTTTC ACAGCCATCA
  Y
  ATCTCCTTCT GCATCTGACA TCATGGTGAT CCTCCAGTCA TCTCCTTCTG CATCTGAGCA
  TGTGCACCTA TAATGGCCTA GGAGGTTGTC CTGGGACCTC TGCTTGTCAC ACTTCAGAGC
  CTTGTATTTA GTTTTGGTTT TGGTTTGAGG TGCTGGGGAT TAAATGTAGG GTCTTAAGTG
  TGCTAGGTAA GCACTCTACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss148913799	ENSMUSSNP2249075	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs48791659					SNP	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:35666899 () rs orientation: forward

Symbol	Name	Function Class
Gm37068	predicted gene, 37068	within coordinates
Rr371096	regulatory region 371096	1071 bp upstream