rs48792614 SNP Detail

Summary

• ID
  rs48792614
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:81476468 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGAGGTTCT CCTACCCTTG
  ATCACTAATT GAGAAAATGC CTTGCAGCTG GATCTCATGG AGGCATTTCC TCAAGGGAGG
  GTCCTTTCTC TGTGATAACT CCAGCTTGTT TCCAGTTGAC ACACAGAACC AGTCAGTACA
  GGGACACTTT CCTATACTTA GGCTAGGAGT GGCTGCTCTG TGGGATGTGC GTGCTTGCTT
  Y
  ATTTCTTCAC AGAAGCATTT AGCTTCACAG GCTTGCTTTT AGAGAACATC TCCAGAATTC
  TGCAAATTCT CCAGTTTGTA GGCATATTAA GCCAAATGTA GTACCCTGTC AACTGGTCCT
  GCACCTCGAT GGGTCTCTGC ATGATTAACA CCCAAGCTGT TGCCCTGTCT TCAAAGCAGC
  ACAGACACCA CTATCACCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss63200837	NES17463347	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48792614					SNP	C	C	C	C	C	C	T	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63200837	NES17463347	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:81476468 () rs orientation: forward

Symbol	Name	Function Class
Gm30288	predicted gene, 30288	1680 bp downstream