rs48792620 SNP Detail

Summary

• ID
  rs48792620
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:41116695 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCTGA CACAAAGGGA TCCAGGGAAT
  C
  ATCTCTAAGA ATGTGAGAAG CCAAG                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss136348423	ENSMUSSNP2737283	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss322923639	CHEV_9_41013482	CHEVERUD	SCREENING_POP	f	SNP			C	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs48792620					SNP	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:41116695 () rs orientation: forward

Symbol	Name	Function Class
1700063D05Rik	RIKEN cDNA 1700063D05 gene	756 bp upstream
Gm68881	predicted gene, 68881	52 bp downstream
Rr194790	regulatory region 194790	495 bp distal
Rr194791	regulatory region 194791	within coordinates
Rr383259	regulatory region 383259	1118 bp upstream
Tssr2832	transcription start site region 2832	787 bp upstream
Tssr84492	transcription start site region 84492	753 bp upstream