rs48792872 SNP Detail

Summary

• ID
  rs48792872
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172037830 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AATGA CCTAGTGTCC CAAGGAGCCC
  R
  GGGAAGGGCA CAGATGGCAG AAAGG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss120007441	PARCsnp_1.17799	PARC_SEQ	INBRED	f	SNP		A	G
ss120010346	PARCsnp_1.07440	PARC_SEQ	INBRED	f	SNP		A	G
ss146183983	ENSMUSSNP2170567	ENSEMBL	ENSEMBL_Sanger	f	SNP	G		G
ss320123248	CHEV_1_174140394	CHEVERUD	SCREENING_POP	f	SNP				G	G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs48792872					SNP	G	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172037830 () rs orientation: forward

Symbol	Name	Function Class
Casq1	calsequestrin 1	within coordinates
Gm17224	predicted gene 17224	within coordinates
Tssr10179	transcription start site region 10179	60 bp upstream
Tssr15168	transcription start site region 15168	137 bp upstream
Tssr15169	transcription start site region 15169	59 bp upstream
Tssr15170	transcription start site region 15170	37 bp upstream
Tssr15171	transcription start site region 15171	19 bp upstream
Tssr15172	transcription start site region 15172	53 bp downstream
Tssr15173	transcription start site region 15173	145 bp downstream
Tssr15174	transcription start site region 15174	197 bp downstream
Tssr15175	transcription start site region 15175	1720 bp downstream