rs48794103 SNP Detail

Summary

• ID
  rs48794103
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:153793385 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAATCTACCC ATCCTCCTCC
  AATACTCTGG GACAGTTTGA GGATTTGAGA TGTGGCAGTA TGAACCATAC ATTTCACAGC
  TTCTCATAAA CATGAGCTAT TTAAAACAAA ACAACACAAC AGCAACAACA ACAACAACAA
  AAACAACAAC AACATCACTA CCCAAAACAT GGGAATCTGT AATTCTTCCA AGAAAAAAGT
  R
  TCCACTTAGG TTCAGGGCAG CTAGCATTCT TGCAGAGTTA TAACATGTGA CCAGGGCCCT
  GCCTTGATAG TGCAACCATG CAGGAGGCAA TGACTTTGCT TGATCTGCTG CATTGGTTCC
  ATGGTCTCTC TCTCTCTCTC TCTCTCTCTC TCTCTCTCTC TCTCTCTCTC TCTTTCTCCC
  CCATCCCTCC CTCCCTCCTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss148011156	ENSMUSSNP3625483	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs48794103					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:153793385 () rs orientation: forward

Symbol	Name	Function Class
Bpifb4	BPI fold containing family B, member 4	Intron
Rr567759	regulatory region 567759	1399 bp proximal
Rr567760	regulatory region 567760	1607 bp proximal