rs48794202 SNP Detail

Summary

• ID
  rs48794202
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:12503121 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                      C AGCTGAAGAG TTCTGAATTC ACGCAGTTGA ATCCTTCTCA
  ACAGTCTGTT TTACGGGAAC CTTCATTACC ATAACCCGCA GTTCTGGTTC CGGAATGAGG
  R
  ATCTTCCTTG CGCCGGTGAT GGTTAACTCC CGTCCCGAGT TTTCTTGTCC CGGGTTTTTT
  CTTCCCGGAT TTTCTCGTCC CGGATTTCGG CACCAACTCT T                    
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss136202222	ENSMUSSNP3143113	ENSEMBL	ENSEMBL_Sanger	r	SNP	C			C
ss139577492	ENSMUSSNP4460380	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A
ss145649694	ENSMUSSNP3792921	ENSEMBL	ENSEMBL_Sanger	f	SNP	A		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs48794202					SNP	?	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss147167383	ENSMUSSNP5486993	ENSEMBL	ENSEMBL_Sanger	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:12503121 () rs orientation: reverse

Symbol	Name	Function Class
Map3k4	mitogen-activated protein kinase kinase kinase 4	within coordinates
Rr392297	regulatory region 392297	within coordinates