rs48794274 SNP Detail

Summary

• ID
  rs48794274
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:33913424 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACCAAACTT CCTGCTAGAG
  CTCCCAGGCC TGACTTGGGG TGGGGGTGGG GGTGGGGCGA GTGGAGAGAA ACCATCTGCC
  AGCCAGCGGA GACCCAGAGA ACTGTGAGTG CTACATCCCA GAGAGCTTGG GAAGGGCTTC
  TAGGAAGCCG GGGCTGAGGG GAGATGGTGG GAGACAGCAG CCTGTGATGG CATGGATAGG
  G
  TGGTGAAAAT CCCTACCTCT CCTGATGCCC ATCAGAGTTC TGGCACCGGA GGGCCTGCCT
  GGCCTGTTGA CCCTGGTCTG GGCGTCTCTT TTGTGGCCAG CCAGTCAGGA CCAGTGTTGT
  CACTTGTCAT CAGGATAGGG ATCGACAAAC AGGCCTGGCA GAGTGCACCA AGCTCCTTCA
  ATTCCTCAGT TAATGATGGC                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss131941559	ENSMUSSNP6551265	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs48794274					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:33913424 () rs orientation: forward

Symbol	Name	Function Class
Kcnip1	Kv channel-interacting protein 1	within coordinates
Kcnmb1	potassium large conductance calcium-activated channel, subfamily M, beta member 1	within coordinates
Rr444879	regulatory region 444879	401 bp distal
Rr444880	regulatory region 444880	within coordinates
Rr444881	regulatory region 444881	1999 bp proximal
Tssr100887	transcription start site region 100887	181 bp downstream
Tssr100888	transcription start site region 100888	127 bp downstream