rs48794877 SNP Detail

Summary

• ID
  rs48794877
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:138233781 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCGCGCGGGA GCTGGGCGGG
  CGCGTCCCGC GGGGAGCCGG GGGCCGTGGC GTTGAGTAGG GGAGCATGCT CAGGGGTCGT
  GTCGCGCACC TCCCGGCGCC GGGGACAGGG GCCGGCTGAG GTGGGGATCA CATTGTCCTG
  GCCCCTCCAC GCCGGGACGG GGCTGTCATG GAGGAGGGAA GGGGGAGGAG CGAGGCCTAC
  C
  GATCGCCGCC GCGGGTCGGC TGGCCGGAGA CCTGCATTTC ACACGCGCCG GGCTTTCCAT
  TCATTCATCC TCGGGGCGCA GCGCGCACGC CTCCGAGGAC CGGGTAGATT CTTCCGCTCT
  TAAGCCACCA CCAGATCGTC TGGGAGATAG CCAACGAACA CTTAATTTTA GAAATAGGAA
  CTTTCAAGAT TACCTTTTCT                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J
ss135953852	ENSMUSSNP594847	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
SNP Consensus Information
SNP					Consensus Type	A/J
rs48794877					SNP	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:138233781 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13876	CpG island 13876	within coordinates
Eif4e	eukaryotic translation initiation factor 4E	Intron
Gm64814	predicted gene, 64814	1772 bp upstream
Mir1956	microRNA 1956	1535 bp downstream
Rr398072	regulatory region 398072	791 bp downstream
Rr586156	regulatory region 586156	1831 bp distal
Rr586157	regulatory region 586157	1282 bp distal
Rr586158	regulatory region 586158	714 bp distal
Rr586159	regulatory region 586159	1095 bp distal
Rr586160	regulatory region 586160	within coordinates
Rr586161	regulatory region 586161	355 bp distal
Tssr31989	transcription start site region 31989	1842 bp downstream
Tssr31990	transcription start site region 31990	1584 bp downstream
Tssr31991	transcription start site region 31991	1562 bp downstream
Tssr31992	transcription start site region 31992	1499 bp downstream
Tssr31993	transcription start site region 31993	1469 bp downstream
Tssr31994	transcription start site region 31994	1438 bp downstream
Tssr31995	transcription start site region 31995	1389 bp downstream
Tssr31996	transcription start site region 31996	731 bp downstream
Tssr31997	transcription start site region 31997	574 bp upstream
Tssr35898	transcription start site region 35898	1766 bp upstream
Tssr35899	transcription start site region 35899	1057 bp upstream
Tssr35900	transcription start site region 35900	1018 bp upstream