rs48795604 SNP Detail

Summary

• ID
  rs48795604
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:3546136 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACTTTAAAA AAAAAATCTT
  CTTTTTAAGT GACCAAAACT AAATGAAGGC TTGAGTATCT AAAGTTGATG ATCAGCAACG
  TGAGGCTCTG GAGTCAGAAG GGGTGACAGC TGTCAAAACA GGCCTGCAGC TCACTCTGGC
  AGAGCTTGGA ATGTGTTCAT TTTTTTTTAC TTTTTATTGA CTTTTTGTGT GTTTACATCA
  Y
  GCACCCCAGT CCCACTCATC TCCCCATTCC TTCATATCTG TTTACCCTTG CAACCTCCCT
  GCCCCAAATA AAACGCATAC AAAATAAAAG GCATAAAAAC CATCCCGTTG TGGAAACTGC
  ATTGTGTCAC AGTGTGTCCC ACCGTCTACC CCTCTGTCCA CACATCATCA CTTGCAAATG
  TTCACTACAA TGAGTCACTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss147720693	ENSMUSSNP3727693	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	T
ss325087886	CHEV_16_3728272	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs48795604					SNP	T	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:3546136 () rs orientation: forward

Symbol	Name	Function Class
Tssr136822	transcription start site region 136822	1744 bp upstream
Tssr136823	transcription start site region 136823	1981 bp upstream