rs48798866 SNP Detail

Summary

• ID
  rs48798866
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:11450644 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGAGGGCAG AGGTGGGATG
  GGCCTGGGGC ACAGGGGAGG TACAGGGGAG AGATTTGGGG AGGTGATGGA GGGGAAACTG
  CAGTTGGGAT ATAATATACA AGAGACAAAT TTAAACAAAA GGGAAAACCT TTTAGAAATA
  AGAAACTGTA AATGCCATGC CACCCCACCT CTTATGTCCT AAATCCTTTA CAGCAGCAAG
  W
  AGCAGTATTC AAATGTCCAA CTGTCTCATT TTTAATAACT TCCTAAAATC CGGGATCCAC
  ATGAGGCTCA CATGTTATAA TTTCATTGAT TGCCTCTTAG GTTTTTTCCT CACAATTTAA
  AAATGGATGT AAAAGTACCT ACCTCATTCC AACCATTTTA GCAGACAGCT CAGCAGTGTA
  TTTTCCTGTG TTGTGCAGCC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52596354	NES15695623	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	T	T	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48798866					SNP	A	A	A	A	A	A	A	A	A	T	T	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52596354	NES15695623	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:11450644 () rs orientation: forward

Symbol	Name	Function Class
Gm59955	predicted gene, 59955	within coordinates
Rr511811	regulatory region 511811	1871 bp distal
Snx29	sorting nexin 29	within coordinates
Tssr137107	transcription start site region 137107	695 bp downstream
Tssr140027	transcription start site region 140027	391 bp downstream