rs48799096 SNP Detail

Summary

• ID
  rs48799096
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:164174867 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGTCT GCAGAATGCT ATCTCCCCAG
  G
  GCTTCTAGCC TTCAAGACTT AAACC                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss148223074	ENSMUSSNP6190038	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
ss320605468	CHEV_2_164158683	CHEVERUD	SCREENING_POP	f	SNP			G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs48799096					SNP	G	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164174867 () rs orientation: forward

Symbol	Name	Function Class
Svs5	seminal vesicle secretory protein 5	within coordinates
Tssr744	transcription start site region 744	382 bp upstream
Tssr745	transcription start site region 745	425 bp upstream
Tssr746	transcription start site region 746	436 bp upstream
Tssr747	transcription start site region 747	449 bp downstream
Tssr748	transcription start site region 748	470 bp upstream
Tssr749	transcription start site region 749	502 bp upstream
Tssr750	transcription start site region 750	515 bp upstream
Tssr751	transcription start site region 751	569 bp upstream
Tssr752	transcription start site region 752	638 bp upstream
Tssr753	transcription start site region 753	645 bp upstream
Tssr754	transcription start site region 754	1317 bp upstream
Tssr21562	transcription start site region 21562	211 bp downstream
Tssr21563	transcription start site region 21563	202 bp downstream
Tssr21564	transcription start site region 21564	171 bp downstream
Tssr21565	transcription start site region 21565	158 bp downstream
Tssr21566	transcription start site region 21566	147 bp downstream
Tssr21567	transcription start site region 21567	135 bp downstream
Tssr21568	transcription start site region 21568	126 bp downstream
Tssr21569	transcription start site region 21569	348 bp upstream
Tssr21570	transcription start site region 21570	410 bp upstream
Tssr21571	transcription start site region 21571	441 bp upstream
Tssr21572	transcription start site region 21572	458 bp upstream
Tssr21573	transcription start site region 21573	487 bp upstream
Tssr21574	transcription start site region 21574	551 bp upstream
Tssr21575	transcription start site region 21575	1329 bp upstream
Tssr21576	transcription start site region 21576	1345 bp upstream
Tssr21577	transcription start site region 21577	1364 bp upstream
Tssr27433	transcription start site region 27433	406 bp downstream
Tssr27434	transcription start site region 27434	429 bp downstream
Tssr27435	transcription start site region 27435	457 bp downstream
Tssr27436	transcription start site region 27436	476 bp downstream
Tssr27437	transcription start site region 27437	497 bp downstream
Tssr27438	transcription start site region 27438	527 bp downstream
Tssr27439	transcription start site region 27439	541 bp downstream
Tssr27440	transcription start site region 27440	551 bp downstream
Tssr27441	transcription start site region 27441	606 bp downstream
Tssr27442	transcription start site region 27442	614 bp downstream
Tssr27443	transcription start site region 27443	677 bp downstream
Tssr27444	transcription start site region 27444	686 bp downstream
Tssr27445	transcription start site region 27445	1302 bp downstream
Tssr27446	transcription start site region 27446	1346 bp downstream
Tssr27447	transcription start site region 27447	1441 bp downstream