rs48799303 SNP Detail

Summary

• ID
  rs48799303
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:34419129 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGAGAAGAAT GCGTCCTATG AGTTATCTAT TAATCCAAAA
  TGTCTCAGCT AAGAAGATAT TTCACCCAGA ACTTTTAACA CCGAAAGGGA GGGAGGGAGT
  G
  AGAGAGGGAG GGGAGCTGGG GTCGGAAGTA TCTTTTACTG AGAACTTTCC CAGAGTTTCT
  CCCTTCGCCA TACCTCCCTC CCTCCAATTT CCAGCTGCA                       
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	LG/J	SM/J
ss149088249	ENSMUSSNP151321	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
ss322573967	CHEV_8_35039573	CHEVERUD	SCREENING_POP	f	SNP		G	G
SNP Consensus Information
SNP					Consensus Type	DBA/2J	LG/J	SM/J
rs48799303					SNP	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:34419129 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
9530006C21Rik	RIKEN cDNA 9530006C21 gene			332 bp upstream
Cpgi20240	CpG island 20240			2 bp proximal
Rbpms	RNA binding protein gene with multiple splicing			Intron
				Noncoding-Transcript-Variant
Rr661901	regulatory region 661901			1286 bp distal
Rr661902	regulatory region 661902			within coordinates
Rr661903	regulatory region 661903			694 bp proximal
Rr661904	regulatory region 661904			1750 bp proximal
Tssr80880	transcription start site region 80880			1627 bp upstream
Tssr80881	transcription start site region 80881			697 bp downstream
Tssr80882	transcription start site region 80882			832 bp downstream
Tssr80883	transcription start site region 80883			877 bp downstream