rs48799885 SNP Detail

Summary

• ID
  rs48799885
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:150840646 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTACTACCCT CTTAACTCCC
  CTCTCCATGC CCTGAATATA CTCTATTCAG TGGTGTCGTT GGTCCCTCAC AGGGAAGGGA
  TGTCTTGGCA TGGGCCCACT GAGGCATCCC CTTCCCCCAC ACCTCACCAA ACCCCATAGA
  ACATAGCCTT CTCTCTTTAT CTTTTTATAA CACAATAACT ACTCCCCAAT GCAAGCAAGA
  Y
  ACAGAGACAA CTCATCACAA AGTCCAAAGG TGGCATCTGG GAACCCTGAT GCACCTCTGA
  AGAGGAGGTC AGAGAGTTCA CAGGTAAAAG ACGAGGTTGG AAATACTTTT AAAGAATACA
  AGTTCACGGA CCAGTGAGCC GCGGTTATGC ATTTAGGAGC CGTCGCCTTT TGCGAGTGAC
  AACTCACTGT CCACGTACTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60858717	NES15999368	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48799885					SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60858717	NES15999368	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:150840646 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17112	CpG island 17112	1476 bp proximal
Rr625814	regulatory region 625814	within coordinates
Rr625815	regulatory region 625815	1446 bp proximal