rs48800105 SNP Detail

Summary

• ID
  rs48800105
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:164266728 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATTACATTAA ATTCAGATAT TTAGATACCT GTGTTTCTTG
  TGCCAGTAAA CAAACTTGGT TTTATTAGTT ACAGTTCTGT CCCTTTTAGC TTGTATAGTT
  M
  CGATTCATCT TGGGAGCCTA ACACCCAAAA GTAGTTCCTT GCATTAAAAC TGTCCCTTTA
  ACTGTGAGGA GTCTCACCCA CTCCTCTTGC CCCGCCCCA                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60337243	NES15839915	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	A	A	C	C	A	A	C	A	A	C	A
ss145978599	ENSMUSSNP895355	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A						C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48800105					SNP	A	A	A	A	A	A	A	C	C	A	A	C	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60337243	NES15839915	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:164266728 () rs orientation: forward

Symbol	Name	Function Class
Atp1b1	ATPase, Na+/K+ transporting, beta 1 polypeptide	within coordinates
Nme7	NME/NM23 family member 7	1858 bp downstream
Tssr9784	transcription start site region 9784	652 bp downstream
Tssr14731	transcription start site region 14731	1734 bp upstream
Tssr14732	transcription start site region 14732	1399 bp upstream
Tssr14733	transcription start site region 14733	1300 bp upstream
Tssr14734	transcription start site region 14734	1255 bp upstream
Tssr14735	transcription start site region 14735	1201 bp upstream
Tssr14736	transcription start site region 14736	1160 bp upstream
Tssr14737	transcription start site region 14737	1100 bp upstream
Tssr14738	transcription start site region 14738	964 bp upstream
Tssr14739	transcription start site region 14739	780 bp upstream
Tssr14740	transcription start site region 14740	739 bp upstream
Tssr14741	transcription start site region 14741	662 bp upstream
Tssr14742	transcription start site region 14742	620 bp upstream