rs48801461 SNP Detail

Summary

• ID
  rs48801461
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:61860907 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCACTGTTCC ATCACCCAGA
  TCTGAATGAC CTTGGAAGTC ACCCAAGTCC CTGAACCAAA GATTCAAACA AGTGGTGGCA
  GTCACCACTC ACAAACCTAT GCTGACTGAC AGCCTGTTCT CTGCAAGCCA AAGCTACCAC
  CACCATAGCC CAAGCTGGGA GGGGCCCTGA AATAAAACAG AACACCGCCC ACCTCCTATC
  Y
  ACATTCGGCT GATCTCTCCA GAGACCAGAC ACAGGAGCAC CTTGGGCATC CAGCAGGACC
  TGGTCATACC TCTTCTCCAC CAGTCTTCCT GTGTTCCCTC TGTTCATTCT CTGGCTCTGG
  TCTGTCCATC ACGGGCTTGG TTCCCCCCAG AGGATCTTCA ACGCTCTTGA GACCCACCCC
  TAAATAAAAG CAAGGGAACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss61280199	NES16887455	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	T	T		C	T	T	T		C
ss323330445	CHEV_10_61487876	CHEVERUD	SCREENING_POP	f	SNP										C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs48801461					SNP	T	T	T	T	T	C	T	T	T	C	C	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61280199	NES16887455	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:61860907 () rs orientation: forward

Symbol	Name	Function Class
Gm47919	predicted gene, 47919	within coordinates
Gm66887	predicted gene, 66887	1826 bp downstream
Rr432503	regulatory region 432503	456 bp distal