rs48801520 SNP Detail

Summary

• ID
  rs48801520
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:45226667 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTCGTCAGT GGCTCCTTTC
  GGGGGAAAGC CCAGCCATCA GCTCGGTGAT GTTCTCGGCC GGGGTTCTGG GGAATCTCAT
  CGCACTGGCA CTGTTGGCGC GCCGCTGGCG TGGGGACACC GGGTGTAGCG CCGGCAGCAG
  GACCTCTATC TCCTTGTTTC ACGTGCTGGT AACGGAATTG GTGCTCACTG ACCTGCTGGG
  R
  ACCTGCCTCA TCAGCCCGGT GGTGCTGGCT TCATATTCAA GAAACCAGAC CCTGGTGGCC
  CTGGCTCCCG AAAGTCACGC GTGTACCTAT TTCGCTTTCA CTATGACCTT CTTTAGTCTG
  GCCACGATGC TCATGCTCTT CGCTATGGCC CTGGAACGCT ACCTCTCCAT CGGGTACCCT
  TACTTCTACA GGCGCCACTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss62358678	NES17228883	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs48801520					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62358678	NES17228883	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:45226667 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6357	CpG island 6357	within coordinates
Gm17173	predicted gene 17173	within coordinates
Gm49364	predicted gene, 49364	within coordinates
Ptger2	prostaglandin E receptor 2 (subtype EP2)	within coordinates
Rr491040	regulatory region 491040	1005 bp distal
Rr491041	regulatory region 491041	634 bp proximal
Tssr4380	transcription start site region 4380	398 bp upstream
Tssr125199	transcription start site region 125199	1032 bp downstream
Tssr125200	transcription start site region 125200	1007 bp downstream
Tssr125201	transcription start site region 125201	738 bp downstream
Tssr125202	transcription start site region 125202	599 bp downstream
Tssr125203	transcription start site region 125203	538 bp downstream
Tssr125204	transcription start site region 125204	291 bp downstream
Tssr128221	transcription start site region 128221	463 bp downstream
Tssr128222	transcription start site region 128222	640 bp downstream
Tssr128223	transcription start site region 128223	692 bp downstream