rs48801806 SNP Detail

Summary

• ID
  rs48801806
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:72961127 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGGAAATATC AAATACAGGC AAGGCACACT GACCTGCACT
  CTCTTCCTGA AGTCCCCCCC CACACCCGCC CCCCCCCGGT GGGGAGTGTC TCCACAGCCA
  Y
  AGTAAGAAAC ATGTCCCCAT CACCTTGGAC AAGGAGCTGA CAGAGAACCA TGTGTATTGT
  TGGGAAAATG TTCCCAAAGG CGTACGTTTA AGTACCAGG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss61180113	NES16682027	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	C	C	T	T	C	C	T	C
ss148631090	ENSMUSSNP5513250	ENSEMBL	ENSEMBL_Sanger	f	SNP		T						C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs48801806					SNP	T	T	T	T	T	C	C	C	T	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61180113	NES16682027	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:72961127 () rs orientation: forward

Symbol	Name	Function Class
Rr399125	regulatory region 399125	604 bp downstream
Tec	tec protein tyrosine kinase	within coordinates
Tssr46619	transcription start site region 46619	684 bp downstream