rs48802566 SNP Detail

Summary

• ID
  rs48802566
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:120123973 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGTGC ATTTGGTAGG GGACTTGTCA
  Y
  GCAAGCATGA AAACCTGGGT TCTCA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss145313839	ENSMUSSNP1162347	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C
ss319932139	CHEV_1_122092820	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs48802566					SNP	C	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:120123973 () rs orientation: forward

Symbol	Name	Function Class
Rr396237	regulatory region 396237	997 bp upstream
Rr417161	regulatory region 417161	905 bp proximal
Rr417162	regulatory region 417162	1106 bp proximal