rs48803530 SNP Detail

Summary

• ID
  rs48803530
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:84510203 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTTTGGAAA TTTCCAAGCC
  ACGATATTCT GCCCTGTCAA AATATATTCA CTGGGGAATT TTTAACTTGA TGCATTTCTT
  TTGAACTTAA TCACATTTCT ACATCTAGCT GGTTTCATTA TTAAAGAAAA GAAAAGGTGG
  TTCCCCTCTG GTCCTAAAGG GAACCACAGA CTTGAGTGAT GCTTGAACTT CTAGGTTCGC
  R
  TACAGTAACA CTGAAACCAG AAACTTGTGG GAGAAATGTC ACTTTATCTG AGAGAGTAAA
  ATCCAACTCT AACAGGAAAC AGCAAATTCA TCTTTTTTCT TTTTCTAAAC CACTCTGCTG
  GAGACAAGTC CCTTGAGTCA GAGCTCTTTA AGGCGCACTT CCTTTACATG GGTCAAACTG
  AAGCCACCGG TTTGTGAGTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60500118	NES16522449	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	A	G	A	G
SNP Consensus Information
SNP					Consensus Type	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48803530					SNP	G	G	G	G	G	G	G	G	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60500118	NES16522449	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:84510203 () rs orientation: forward

Symbol	Name	Function Class
Mir155	microRNA 155	825 bp upstream
Mir155hg	Mir155 host gene (non-protein coding)	within coordinates
Rr404941	regulatory region 404941	within coordinates
Rr518521	regulatory region 518521	within coordinates
Rr518522	regulatory region 518522	434 bp proximal
Tssr139172	transcription start site region 139172	1455 bp downstream
Tssr139173	transcription start site region 139173	887 bp upstream
Tssr139174	transcription start site region 139174	1670 bp upstream
Tssr139175	transcription start site region 139175	1758 bp upstream