rs48804328 SNP Detail

Summary

• ID
  rs48804328
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:29122507 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CATGGAACAC CTTCCCGGCA GAAGCCTCGC AGATTCTATA
  ACGGATTTTA GTGGGTGAAG GCTCGACCTC CCATCGTCTT CACGAATGAC TCGAACACCC
  C
  CACCCCGTCT CAGTCCTTTT CGGGCTGTCA GCCTGAGTCC CTACACTTGG CTTCACTCTA
  GTCCTGTGCA CGCATTCGGA CTTCTCAGCC TGGCTCTGT                       
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J
ss131889931	ENSMUSSNP6445117	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
SNP Consensus Information
SNP					Consensus Type	DBA/2J
rs48804328					SNP	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:29122507 () rs orientation: forward

Symbol	Name	Function Class
A630052C17Rik	RIKEN cDNA A630052C17 gene	within coordinates
Cpgi2670	CpG island 2670	within coordinates
Ppp4r3b	protein phosphatase 4 regulatory subunit 3B	383 bp upstream
Rr369144	regulatory region 369144	175 bp upstream
Rr444150	regulatory region 444150	within coordinates
Rr444151	regulatory region 444151	985 bp proximal
Tssr100691	transcription start site region 100691	406 bp upstream
Tssr100692	transcription start site region 100692	427 bp upstream
Tssr100693	transcription start site region 100693	441 bp upstream
Tssr107208	transcription start site region 107208	220 bp downstream