rs48804476 SNP Detail

Summary

• ID
  rs48804476
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:71061943 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAGACCCTG TCTCAAAGTC
  GGAGTAAAAA CGGTGTCTCC TGTAGCCCAG GCTGACCTCC AGCTCTCTAC TTCACTAAGG
  CTCCTTGAAC AGGTGGTCCT CCTGCCTCCA CCTCTGGGTG CACGCTGGGA ATGAGAGCAT
  GCTTCTTTCC CCCACTCCAG CGCAGACGCA CGTGTATAAC ACGCGGCCCC GTGAGAGCAC
  R
  AGGGGTCGTG GCGCATGGGC GTCGGGAAGC ATCCAGGCTA AGGCTTGCTA TCGCTGCAAG
  TGTCCCCGGT TGGACACGAC GGGTTTAGTG GGGACTTGCT GGAGATTGCG CACAGGTGGG
  TCGTCAGCAC CCGGTGGCGC AGTCATGAGC TCAGGTTTCC TGTGTGAGTG TGACAGCATG
  CAGGTCACCA CGGCGCTAAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60632754	NES16282200	PERLEGEN	MM_PANEL2	f	SNP	G	A	G	G	G	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48804476					SNP	G	A	G	G	G	G	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60632754	NES16282200	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:71061943 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20475	CpG island 20475	526 bp distal
Cpgi20476	CpG island 20476	within coordinates
Cpgi20477	CpG island 20477	1619 bp proximal
Gm45546	predicted gene 45546	1132 bp upstream
Gm63790	predicted gene, 63790	1100 bp upstream
Rr400904	regulatory region 400904	1551 bp upstream
Rr664832	regulatory region 664832	990 bp distal
Rr664833	regulatory region 664833	489 bp distal
Rr664834	regulatory region 664834	841 bp distal
Rr664835	regulatory region 664835	within coordinates
Rr664836	regulatory region 664836	610 bp proximal
Rr664837	regulatory region 664837	1111 bp proximal
Rr664838	regulatory region 664838	1636 bp proximal
Ssbp4	single stranded DNA binding protein 4	859 bp upstream
Tssr77777	transcription start site region 77777	1097 bp upstream
Tssr77778	transcription start site region 77778	1406 bp upstream
Tssr81636	transcription start site region 81636	963 bp upstream