rs48804839 SNP Detail

Summary

• ID
  rs48804839
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:118341493 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACAATTGCC CAGACAGAAT
  TGACACTTGA TAGTATATAA TCTGCCTAAT AAATTTGATT GAAATTGTGA CATTTTCAAA
  GTTATTTCTA GTATCTCAAA TTAAGCTTTA AAGGGAGAGT TCCCTTTGAT TCAGCTAAAT
  CACAATAATT GGTTTTAAAG CAAATAGAAA CACACTGATT ATCAATTAAG CCAATGGATT
  R
  ATACAAATGC GGGCTTGTGT ATTTGTTTCT AAGCTTTGCC CTTCTCCCCG ATACTCCATA
  CTTACTTCTA TCAATCTAGT GATTAGAAAA ACAAAGTTCT GGTAAATGAT GGAAATGTTA
  CACAAACAAG TGCCATGGAG TGAAGTCCAC ATGTGCCAAG TACGGAGGCT CTGTTCATTT
  GAATGTGCCT GTCAGCACTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	CAST/EiJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
ss52610945	NES15502351	PERLEGEN	MM_PANEL2	f	SNP	G	G	A	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	CAST/EiJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
rs48804839					SNP	G	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52610945	NES15502351	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:118341493 () rs orientation: forward

Symbol	Name	Function Class
Rr369642	regulatory region 369642	345 bp downstream
Rr387826	regulatory region 387826	1806 bp downstream
Rr474222	regulatory region 474222	267 bp distal
Tssr115561	transcription start site region 115561	993 bp downstream