rs48805001 SNP Detail

Summary

• ID
  rs48805001
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:69574056 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGGAACAACA GTCAAGGCAA AGCCATGGAG AGCTGTTCTT
  GACCGTTCCT TGTCCTTTGT CTAGCCAGTT TTTGGAATGG GAAATCCCCA CCCCCTTTAT
  W
  ACAATCATAG TTTCACAAAC CCCAGGAATG TTCCATGCGG AGAAAGGCTA AGTTTTGCGT
  TTGCCCGTGG AATTTTGACA GTGATAATAT CCCCTTGAT                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss132360128	ENSMUSSNP4827206	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T
ss323731047	CHEV_11_69496732	CHEVERUD	SCREENING_POP	f	SNP			A	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs48805001					SNP	A	T	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:69574056 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3142	CpG island 3142	937 bp distal
Rr450067	regulatory region 450067	1395 bp distal
Rr450068	regulatory region 450068	1172 bp distal
Rr450069	regulatory region 450069	656 bp distal
Rr450070	regulatory region 450070	267 bp distal
Rr450071	regulatory region 450071	603 bp proximal
Senp3	SUMO/sentrin specific peptidase 3	1146 bp upstream
Tnfsf13	tumor necrosis factor (ligand) superfamily, member 13	within coordinates
Tnfsf13os	tumor necrosis factor (ligand) superfamily, member 13, opposite strand	within coordinates
Tnfsfm13	tumor necrosis factor (ligand) superfamily, membrane-bound member 13	within coordinates
Tssr102519	transcription start site region 102519	1093 bp upstream
Tssr102520	transcription start site region 102520	1125 bp upstream
Tssr102521	transcription start site region 102521	1166 bp upstream
Tssr102522	transcription start site region 102522	1259 bp upstream
Tssr102523	transcription start site region 102523	1321 bp upstream
Tssr108774	transcription start site region 108774	1426 bp upstream
Tssr108775	transcription start site region 108775	1374 bp upstream
Tssr108776	transcription start site region 108776	1334 bp upstream
Tssr108777	transcription start site region 108777	1277 bp upstream
Tssr108778	transcription start site region 108778	1249 bp upstream
Tssr108779	transcription start site region 108779	1225 bp upstream
Tssr108780	transcription start site region 108780	1151 bp upstream