rs48805054 SNP Detail

Summary

• ID
  rs48805054
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:23593375 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGAGT CTGAGATACA GGCTCCCAGT
  T
  CTCTCCTCAA ATCACCATTA AGAAA                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321488691	CHEV_5_22894195	CHEVERUD	SCREENING_POP	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs48805054					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:23593375 () rs orientation: forward

Symbol	Name	Function Class
4930580E04Rik	RIKEN cDNA 4930580E04 gene	within coordinates
5031425E22Rik	RIKEN cDNA 5031425E22 gene	within coordinates
Cpgi15578	CpG island 15578	1164 bp distal
D5Jcs54	DNA segment, Chr 5, John C. Schimenti 54	1156 bp proximal
Gm43058	predicted gene 43058	133 bp upstream
Rr112207	regulatory region 112207	within coordinates
Rr124896	regulatory region 124896	974 bp distal
Rr367795	regulatory region 367795	1042 bp downstream
Tssr45359	transcription start site region 45359	1108 bp downstream
Tssr45360	transcription start site region 45360	1080 bp downstream
Tssr45361	transcription start site region 45361	1060 bp downstream
Tssr50259	transcription start site region 50259	1878 bp upstream
Tssr50260	transcription start site region 50260	1453 bp upstream
Tssr50261	transcription start site region 50261	1361 bp upstream
Tssr50262	transcription start site region 50262	1316 bp upstream