rs48805154 SNP Detail

Summary

• ID
  rs48805154
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:126767419 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACTAGCACA TTCTAACAAG
  AAGGCCAGGT ACAAGAAGGG ACACGGCCCC ACCCTCCTAC TACAAGTGCT CTAAGGTGGC
  TTGGAAATAG CATGTCTCCC CAAAGGCTCG TAGGTTGGAT GGTTGGTAGC CATTGGTGAA
  TTCAGTCACT GAGTTGGTTG GGTCCTGAGT GTGCAAACCC AGTAGATTCA TCTCCATGGT
  R
  GATTCATAAT TTGATAATAT TTTTGGTGGG GGCTGGGTGG AGAAGGCCAC CAGGGACATC
  TTATTAGGGG TTGCATCTTG TCCCTGGTCT CTTCCCCATC CCTCCTGTGG CTTGCACCCC
  AGCTAGCAAC TTTGCTATGA TGCTCTGCCT CACCGTAATC CCACAACAAT GGAGACATGC
  ATCCATGAAT TGAAACCTTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss133625931	ENSMUSSNP6848781	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs48805154					SNP	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:126767419 () rs orientation: forward

Symbol	Name	Function Class
Gm29788	predicted gene, 29788	1993 bp downstream
Gm67331	predicted gene, 67331	441 bp downstream
Rr638910	regulatory region 638910	1562 bp proximal
Rr638911	regulatory region 638911	1632 bp proximal