rs48805255 SNP Detail

Summary

• ID
  rs48805255
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:119417252 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATCTTAATG CGGATTCTCT
  TCCCAATGCT TACCAATAAG CAAACGAGAG AGAGAGAGGG AGAGAGAGAG AGAGAGAGAG
  AGAGAGAGAG AGAGAGATTC TTTTCTTTCT TTTCTTCGAG TACAAGAAGC CAAGAAAAGC
  AAGGGATTCC CAGTCAGAAG GTATCCTTTG GGACTGTCCG TTTTATTGGT TGAAATGTCC
  R
  CGCATGCGTA TAGTGCGCAT TGAGCAAATC TACGCACACC CTCTCCTCTC CGATCCTTTC
  CATATTCTCT CCATCACTTC ATGCACTGTT TTGTTTTGTT TTTTCTAAGC CCACTAAGTG
  GCGTGGTGTT GCTGCGCTAC GCATGCGTGT GCGTGGACAA CCTATAGGGC CCTCATCCCT
  GATGAAAACT GGCATTCCTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60832242	NES16024199	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48805255					SNP	G	G	G	G	G	A	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60832242	NES16024199	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:119417252 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16447	CpG island 16447	within coordinates
Gm31190	predicted gene, 31190	1057 bp downstream