rs48806014 SNP Detail

Summary

• ID
  rs48806014
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:92585216 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTTTTGACA AATTTTCTCA
  GAAAACATCA CATCTTTCCA TGTAACATGA TTAAAACAAT CTGTAGACAG CAGGAGACCT
  GCCACTCCAC TTCCTCCCGA GCTCATGTTT TGTTTTGTTT TTTTAGCTTC TTTAAAAGAA
  CATACACGGC TGTAATCAAA TGCTAGCCAG AGAAAGCTGT GACACTAACC ACGGCAAAGT
  K
  TGCTTCTCAT CTCTCATCTG CTAGAACTGC ATCGCCAATT GCCCAGGATG TACACCTGGG
  TTGGTAATGA GCCACATTTC ATGCTCATGA TGGCTTTTCT GCTGCCCTTG TTGCTGCTGG
  CTGCCTTACA TGTCCTCAGC GTGGACTTCC TCTCAGCTTG AGTGGGGCTG TGGGGGAGGT
  CACCTTGCCA ACCAGACAGA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60909752	NES16210506	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	G	G	T	T	T		G	T	T	G		T
ss321853088	CHEV_6_92558229	CHEVERUD	SCREENING_POP	f	SNP											T					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs48806014					SNP	T	T	T	T	T	G	G	T	T	T	T	G	T	T	G	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60909752	NES16210506	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:92585216 () rs orientation: forward

Symbol	Name	Function Class
D6Mit284	DNA segment, Chr 6, Massachusetts Institute of Technology 284	785 bp distal
Prickle2	prickle planar cell polarity protein 2	within coordinates