rs48806389 SNP Detail

Summary

• ID
  rs48806389
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:99098785 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACTTAGAGC AAGTTTCTCC
  TGGCAATAGA AAGTAGTCCT GGCATCATGG CCACACCCTG GAACTGTAGA ATTCCAGCTC
  AGCAGCTGGC AGAGCTCTGG GTCTCCAAGT CATCTCTGGC ATCTGAGCAG TCCTTTCTAG
  ATGATAGTCT AAAATCTAGG AAGTTCAGAA GGGGGCAAGA GGAGTTGGCA GTCCTTGAAA
  W
  CCAACCACAG GGATTAACTA ATCCAAATAG GCAAACTGGG AGAGGAGTGT ACTTAGCCTA
  CCTGGATCTA TGTACCACAT GGAAAAATTA GAGAATCCCT GTTTGCAAAA GGGCTAAGAT
  TTCATCAGTT CTATGAGACT GAAGAGTTCT GAGGAATTTG ACTTTGCTTA GAACAGTTCT
  TATATGATCC ACAAAAATGA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
ss60654328	NES16257428	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
rs48806389					SNP	A	A	A	A	A	A	T	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60654328	NES16257428	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:99098785 () rs orientation: forward

Symbol	Name	Function Class
Rr382525	regulatory region 382525	558 bp upstream
Rr668405	regulatory region 668405	931 bp proximal