rs48806417 SNP Detail

Summary

• ID
  rs48806417
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:74113559 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCTTTGGGC TAAGAGGTCA
  CACTCTTACA GGTGCCGTAT CCTCCCAGAG TCAAGGGCAC CCATCTGCAG AGGGCTTTAA
  AGCAGCAGTC CTCATATTTC TGGATTGGCA TCATGATCTA CAGAGCCACG TGCTTTGCTT
  GTCAAGGAGA GCAGCAGAGT TGACAACCTG GTGACTCATT TTTCAGTTTC TCGTGTCTCC
  Y
  GCGCTAAGCT TCTGGGAGCC GTGTGTGTAC CATGCTAACC TGTCCTGTCT GAGCAGAGCA
  CCAAATCATT TGTCTTTGTG GAGTGGACAG TCTTGGGCTG TCAACTTGAC CTGCAGCTTT
  GCAAGGTCAA ATGATTTCTG AAGTGGGGAC CTGGGGGTTG TGGCTTATTA ACTCTAATAT
  ATTTTAAACA TGAGACATAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60279627	NES15784912	PERLEGEN	MM_PANEL2	f	SNP	T	C	C	C	T	C	C	C	C	C	C	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48806417					SNP	T	C	C	C	T	C	C	C	C	C	C	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60279627	NES15784912	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:74113559 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9490	CpG island 9490	1061 bp distal
Ehd3	EH-domain containing 3	within coordinates
Tssr145810	transcription start site region 145810	1725 bp downstream
Tssr145811	transcription start site region 145811	1693 bp downstream
Tssr145812	transcription start site region 145812	1663 bp downstream
Tssr145813	transcription start site region 145813	1623 bp downstream
Tssr145814	transcription start site region 145814	1608 bp downstream