rs48806650 SNP Detail

Summary

• ID
  rs48806650
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:130487615 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAGCA AATAAGTCGT AGCAGCTTTC
  Y
  AGTGCACTGT GATGCCGGCT CACGC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss61080651	NES16590420	PERLEGEN	MM_PANEL2	f	SNP	C	T	C	T	T	C	C	C	C	C		T	C	C		C
ss135897818	ENSMUSSNP880739	ENSEMBL	ENSEMBL_Sanger	f	SNP		T						C
ss320966020	CHEV_3_130396884	CHEVERUD	SCREENING_POP	f	SNP											C				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs48806650					SNP	C	T	C	T	T	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61080651	NES16590420	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:130487615 () rs orientation: forward

Symbol	Name	Function Class
Gm36373	predicted gene, 36373	1251 bp upstream
Gm65113	predicted gene, 65113	within coordinates
Ostc	oligosaccharyltransferase complex subunit (non-catalytic)	1951 bp downstream
Rr398016	regulatory region 398016	72 bp upstream
Rr585191	regulatory region 585191	1819 bp distal
Rr585194	regulatory region 585194	160 bp proximal
Rr585195	regulatory region 585195	247 bp proximal
Rr585196	regulatory region 585196	775 bp proximal