rs48806835 SNP Detail

Summary

• ID
  rs48806835
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172152193 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAGAAACAG AGGAGTAAGC
  ATTCACTAAT CAGAGACCGG CTCTGACATT GGAAGTCTGG CCCTGAGACA TCTTGGGGTC
  ATTGGTATTC TTTGGCAAAG CTGGAATAAG ATGTATCAGG GAGGGTAGGG AAGGAGAGGC
  CACCGGGGCC TCTGCAGGGA GAAGGCCTGA GAAGCAGAGG TAGGGCTTGG GGGAGTAGGG
  W
  TAGGTGCAAA GTGGAGGCAG AGGCAGAGGG GGAAGAGAAG GCAGATGAAA AAGTCCCTGA
  TAGAAACCTG TCCGAGATTG TGTCAGAGAG AGGGACAGCG CAGAGACAGA GGGAGCAGTG
  CGGAATGGGC ATGGGCTAGA ACCAGCCTAG TTGGAGTGAA GGAGGAGAGG GGAGTGGGAA
  GACCTGAGGT GGCCATGGAG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss120009161	PARCsnp_1.18659	PARC_SEQ	INBRED	f	SNP		A	T
ss120012366	PARCsnp_1.08450	PARC_SEQ	INBRED	f	SNP		A	T
ss146187945	ENSMUSSNP4614888	ENSEMBL	ENSEMBL_Sanger	f	SNP	T		T
ss320124215	CHEV_1_174254757	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs48806835					SNP	T	A	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172152193 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1043	CpG island 1043	918 bp proximal
Gm36937	predicted gene, 36937	965 bp downstream
Gm70847	predicted gene, 70847	1654 bp upstream
Kcnj9	potassium inwardly-rectifying channel, subfamily J, member 9	within coordinates
Rr423524	regulatory region 423524	within coordinates
Rr423525	regulatory region 423525	279 bp proximal
Rr423526	regulatory region 423526	469 bp proximal
Rr423527	regulatory region 423527	1164 bp proximal
Rr423528	regulatory region 423528	1271 bp proximal
Rr423529	regulatory region 423529	1686 bp proximal
Tssr15210	transcription start site region 15210	1592 bp downstream
Tssr15211	transcription start site region 15211	1602 bp downstream
Tssr15212	transcription start site region 15212	1622 bp downstream