rs48808223 SNP Detail

Summary

• ID
  rs48808223
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:24359532 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGCAGAAAT CATGTTCCCA
  TGACAACAGC CCTGTGACGC TAGAGCCACG ATTATCTGAA CTTTACAAGC GAAGGGCAAG
  AAACCATTTG CCGGAGCAGG TTTCCCAGGA AAAGCAGCTG CTTGTGAAAA CAATCAGGTC
  ACGAGGCACT AGGACTTGTG GGAGAGCAAG GAGCTGCTGG GCCACTTGTC ACCCGCATAT
  K
  CGTGAGGATG ACACCACTTC CCTGCCCCAC AGTGGGTAGG ATAGAGGGAC TGGGCTGGTC
  CATAGCTGTC ACTCGCACAG TGACTTTGGG TGTGGCATTT CCTGGTTCTT GGTCTCTGTT
  GCAGGGTCAT CTCCATCCTC CGGCCTCCTG GTCTCGTCTG TGATAACTAT GAGGTGTTAC
  TGAGACTCTG GTAAATCCAA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60982575	NES16150667	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48808223					SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60982575	NES16150667	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:24359532 () rs orientation: forward

Symbol	Name	Function Class
Gm4598	predicted gene 4598	1187 bp upstream
Rr643537	regulatory region 643537	850 bp distal
Rr643538	regulatory region 643538	1429 bp proximal