rs48809542 SNP Detail

Summary

• ID
  rs48809542
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:3470166 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAACAAAAA ATCCATAGAA
  CCACTTACTG CTCTATTGTG CTTTGCTTGC AAATTCCCCT GCTGCCTACA TAGAGGTTCA
  ACCTTCCATT TATAACAAAG TCTGGCTGCT GGGGCAGGGT AACATCATAG TAGAATGCTT
  GCCCAACATA TCCAAGGCCC TGAGTTCTAT TCTCAGCAAC ACAAAACAAT CCCAAATACT
  Y
  CCTCAGTTGG GTTTAGTGGT TCACATGTAT AGTCTCAGCT ACTCCAGAGA TAAAGGTGTG
  AGGATTATTT GAGATCATAA GTTCCAGTCT GGACAACACA ACATCTATTA AAAAAAGTCA
  GGGCAGGAAG ATGCCATAGC AGGTAAAGGC ACACCAACTC CAGGCCTGAC AACCTGAGTT
  TGATCTCTAG TCCCCACATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	MSM/Ms
ss146262165	ENSMUSSNP5942714	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	MSM/Ms
rs48809542					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:3470166 () rs orientation: forward

Symbol	Name	Function Class
Gm13184	predicted gene 13184	within coordinates
Suv39h2	suppressor of variegation 3-9 2	within coordinates
Tssr15896	transcription start site region 15896	516 bp downstream