rs48809719 SNP Detail

Summary

• ID
  rs48809719
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:103831068 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCCGGGCACA GCAAGAATGA GGTGGATAAG TGATGGTCAC
  ATTTCCACCT TCTGCCAGTC ACTGGCTCCC CTGTGATCCA CCTTAGGATT CAGCCTAATA
  G
  ATGTTCCACA GGATCCTACA GCACCTGAGG TTAGACCTCA ACCCATCAGA CAAACATTTT
  CACCTCCTGG TGCCTCCCTG TCTCCACCTC TAAGATGCA                       
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J
ss138011892	ENSMUSSNP2556464	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
SNP Consensus Information
SNP					Consensus Type	A/J
rs48809719					SNP	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:103831068 () rs orientation: forward

Symbol	Name	Function Class
Rr471835	regulatory region 471835	1269 bp distal
Rr471836	regulatory region 471836	764 bp distal
Serpina1a	serine (or cysteine) peptidase inhibitor, clade A, member 1A	1247 bp upstream
Tssr117529	transcription start site region 117529	1510 bp upstream
Tssr117530	transcription start site region 117530	1179 bp upstream
Tssr117531	transcription start site region 117531	863 bp downstream
Tssr117532	transcription start site region 117532	917 bp downstream
Tssr117533	transcription start site region 117533	949 bp downstream
Tssr117534	transcription start site region 117534	965 bp downstream