rs48810374 SNP Detail

Summary

• ID
  rs48810374
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:127682939 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTGGAAAC TATGGGATGA
  GAAATTCTCA ATCAGATTGA GGGAATTGGC AATATGCAAG ACCTCAGATT TAAATTCTCT
  ACCTCTGTAG GCATTCTGCA CATCTATAGG TAAAAATATG AACAAAGGGA TTAAAAATAA
  TTTTTACTAA TTGGAAGAAT GAAAAATATT CCCTATTTTT CCCTACAGGG AATTCCTTTA
  R
  TTCCATCTGG TATTACAGAG TAATATATCA AAGGAAATAT AACAAAAATT TAATTTTCTT
  AAGAATGTTC CAATAGTAGA TATTAATGAT TTTGTTCTTC ATTTTTCCTA AGTTCAAAAA
  CTTGTGCTAT GTTTTCCTTT GATCAGAATT CTGATAAGCT GCAGTTGTTG CTGTAGGAAA
  AAACAGGCAC AAAGCAGGTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss135874283	ENSMUSSNP6807069	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	G
ss320957923	CHEV_3_127592208	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs48810374					SNP	A	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127682939 () rs orientation: forward

Symbol	Name	Function Class
Fam241a	family with sequence similarity 241, member A	Intron
Rr584892	regulatory region 584892	117 bp proximal
Rr584893	regulatory region 584893	840 bp proximal
Rr584894	regulatory region 584894	1506 bp proximal