rs48811655 SNP Detail

Summary

• ID
  rs48811655
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:24532844 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCAGAAGGC CCCCTGCCCA
  CCCACCCTGA GAATTCTCTG GCAGACCTCT GAGTCAGCTA GAATCCCTTC CTCAGCCCCT
  CTAGCCTTGA CCATTCCATG CCTGCAGCAA GACCCGAAGC CTTCCCCAAC CCCAGAGTTT
  TTAGCCCTGT CCCAGAAGTC CTGAGTCCCA GGCTCCATAA CCACAGGTCT CTGGGCTCAG
  K
  GAAGTCCTAA AGAGTCTCGT TCACGTTCAA GTGGGAATCC CTTGAGCCTG TCTGCATAGG
  TGGTGCTGTT TAGAGACCAT CTTAGGGAAA GGAGCTGGTA AGAAAGATGG ATCTTAAGGA
  CCCCCCCCCC AGAATAGACA CAGAGACTTC CAAGAAAAGA GATGGGGTGT GGATGAGTAC
  CAGGCCCTGG TCGGAGGAGG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss148091644	ENSMUSSNP2020220	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs48811655					SNP	T	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:24532844 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15591	CpG island 15591	1881 bp distal
Cpgi15592	CpG island 15592	1716 bp proximal
Gm15589	predicted gene 15589	within coordinates
Kcnh2	potassium voltage-gated channel, subfamily H (eag-related), member 2	within coordinates
Rr112277	regulatory region 112277	644 bp distal
Rr124919	regulatory region 124919	956 bp proximal
Tssr50305	transcription start site region 50305	1425 bp downstream
Tssr50306	transcription start site region 50306	1710 bp downstream