rs48813225 SNP Detail

Summary

• ID
  rs48813225
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:83171368 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGTCAGTTCT GCAAGAAGAT
  CCGAAGGCGG ATGCCGGGGA CGGATGCTCC TGGGATCCCA GCAGCGCTGG CCTTTGGCTC
  ACAGGTTTAG GGCGGAGACT GTGAGGGGAG GAAGCTGAGC AGAAATGGGG GTAGGGGGGA
  CGCCTAGCAC ATTAAGATCC GGATCTGGCG GGGGGATTGA ATTAGGAAGC TAGGAACTAT
  R
  ATGGCGGACA AGGATGGGCT CTTGACCCCA ACCTATCACA CAGGTATCCG ACACACTCCT
  GGACTGCAGG AAGCACTTGA CGTGGGTGGT AGCTGTTCTG CAGGAGGTGG CAGCTGCAGC
  CGCCCAGCTT ATTGCCCCCT TGGCAGAGAA CGAGGGGCTG CCTGTGGCTG CACTGGAGGA
  GCTGGCCTTC AAAGCAAGCG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60903743	NES15949731	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48813225					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60903743	NES15949731	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:83171368 () rs orientation: forward

Symbol	Name	Function Class
Dctn1	dynactin 1	within coordinates
Tssr57329	transcription start site region 57329	1423 bp upstream
Tssr57330	transcription start site region 57330	1452 bp upstream
Tssr57331	transcription start site region 57331	1490 bp upstream
Tssr57332	transcription start site region 57332	1537 bp upstream
Tssr57333	transcription start site region 57333	1574 bp upstream
Tssr57334	transcription start site region 57334	1613 bp upstream
Tssr57335	transcription start site region 57335	1639 bp upstream