rs48813866 SNP Detail

Summary

• ID
  rs48813866
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:147167540 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTTA TGACATCATA ATCTAGATTA
  Y
  GATCTTGCTA AGGTCACAAG GCAGC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss134013083	ENSMUSSNP655843	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
ss322086699	CHEV_6_147214564	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs48813866					SNP	T	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:147167540 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18178	CpG island 18178	1490 bp distal
D6Mit26	DNA segment, Chr 6, Massachusetts Institute of Technology 26	1171 bp distal
Rr145960	regulatory region 145960	1539 bp distal
Tssr59618	transcription start site region 59618	1939 bp downstream
Tssr64144	transcription start site region 64144	1890 bp upstream